The Role of Ala198 in the Stability and Coenzyme Specificity of Bacterial Formate Dehydrogenases
- Authors: Alekseeva A.A.1,2, Fedorchuk V.V.2,3, Zarubina S.A.2,3, Sadykhov E.G.1, Matorin A.D.3, Savin S.S.1,2,3, Tishkov V.I.1,2,3
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Affiliations:
- A.N. Bach Institute of Biochemistry
- Innovations and High Technologies MSU Ltd
- M.V. Lomonosov Moscow State University
- Issue: Vol 7, No 1 (2015)
- Pages: 60-69
- Section: Research Articles
- Submitted: 17.01.2020
- Published: 15.03.2015
- URL: https://actanaturae.ru/2075-8251/article/view/10513
- DOI: https://doi.org/10.32607/20758251-2015-7-1-60-69
- ID: 10513
Cite item
Abstract
It has been shown by an X-ray structural analysis that the amino acid residues Ala198, which are located in the coenzyme-binding domain of NAD+-dependent formate dehydrogenases (EC 1.2.1.2., FDH) from bacteria Pseudomonas sp.101 and Moraxella sp. C-1 (PseFDH and MorFDH, respectively), have non-optimal values of the angles ψ and φ. These residues were replaced with Gly by site-directed mutagenesis. The mutants PseFDH A198G and MorFDH A198G were expressed in E.coli cells and obtained in active and soluble forms with more than 95% purity. The study of thermal inactivation kinetics showed that the mutation A198G results in a 2.5- fold increase in stability compared to one for the wild-type enzymes. Kinetic experiments indicate that A198G replacement reduces the K M NAD+ value from 60 to 35 and from 80 to 45 μM for PseFDH and MorFDH, respectively, while the K M HCOO- value remains practically unchanged. Amino acid replacement A198G was also added to the mutant PseFDH D221S with the coenzyme specificity changed from NAD + to NADP +. In this case, an increase in thermal stability was also observed, but the influence of the mutation on the kinetic parameters was opposite: KM increased from 190 to 280 μM and from 43 to 89 mM for NADP + and formate, respectively. According to the data obtained, inference could be drawn that earlier formate dehydrogenase from bacterium Pseudomonas sp. 101 was specific to NADP +, but not to NAD +.
About the authors
A. A. Alekseeva
A.N. Bach Institute of Biochemistry; Innovations and High Technologies MSU Ltd
Author for correspondence.
Email: vitishkov@gmail.com
Россия
V. V. Fedorchuk
Innovations and High Technologies MSU Ltd; M.V. Lomonosov Moscow State University
Email: vitishkov@gmail.com
Россия
S. A. Zarubina
Innovations and High Technologies MSU Ltd; M.V. Lomonosov Moscow State University
Email: vitishkov@gmail.com
Россия
E. G. Sadykhov
A.N. Bach Institute of Biochemistry
Email: vitishkov@gmail.com
Россия
A. D. Matorin
M.V. Lomonosov Moscow State University
Email: vitishkov@gmail.com
Россия
S. S. Savin
A.N. Bach Institute of Biochemistry; Innovations and High Technologies MSU Ltd; M.V. Lomonosov Moscow State University
Email: vitishkov@gmail.com
Россия
V. I. Tishkov
A.N. Bach Institute of Biochemistry; Innovations and High Technologies MSU Ltd; M.V. Lomonosov Moscow State University
Email: vitishkov@gmail.com
Россия
References
- Wierenga R.W., Hol W.G.J. // Nature 1983, V.302, №5911, P.842-844
- Lamzin V.S., Dauter Z., Popov V.O., Harutyunyan E.H., Wilson K.S. // J. Mol. Biol. 1994, V.236, №3, P.759-785
- Filippova E.V., Polyakov K.M., Tikhonova T.V., Stekhanova T.N., Boiko K.M., Sadykhov E.G., Tishkov V.I., Popov I.O., V.O. I.O., Labrou I.O., N. I.O. // Crystallography Reports. 2006, V.51, №4, P.627-631
- Shabalin I.G., Filippova E.V., Polyakov K.M., Sadykhov E.G., Safonova T.N., Tikhonova T.V., Tishkov V.I., Popov V.O. // Acta Crystallogr. D Biol. Crystallogr. 2009, V.65, №12, P.1315-1325
- Shabalin I.G., Polyakov K.M., Tishkov V.I., Popov V.O. // Acta Naturae. 2009, V.1, №3, P.89-93
- Matorin A.D. // Mechanism of substrate and coenzyme specificity of bacterial formate dehydrogenase. // Ph.D. Thesis. M.V.Lomonosov Moscow State University, Moscow, 2000, 2000
- Alekseeva A.A., Dolina I.A., Zarubina S.A., Matorin A.D., Sadykhov E.G., Savin S.S., Tishkov V.I. // Biochimie. 2015. submitted for publication. 2015
- Rojkova A.M., Galkin A.G., Kulakova L.B., Serov A.E., Savitsky P.A., Fedorchuk V.V., Tishkov V.I. // FEBS Lett. 1999, V.445, №1, P.183-188
- Rao S.T., Rossmann M.G. // J. Mol. Biol. 1973, V.76, №2, P.241-256
- Lesk A.M. // Curr. Opin. Struct. Biol. 1995, V.5, №6, P.775-783
- Tishkov V.I., Popov V.O. // Biomol. Eng. 2006, V.23, №1, P.89-110
- Cornish-Bowden A. // Fundamentals of Enzyme Kinetics. 4th Ed. Wiley-Blackwell, 2012. 2012
- Serov A.E., Odintzeva E.R., Uporov I.V., Tishkov V.I. // Biochemistry (Moscow). 2005, V.70, №4, P.804-808
- Tishkov V.I., Popov V.O. // Biochemistry (Moscow). 2004, V.69, №11, P.1252-1267
- Hatrongjit R., Packdibamrung K. // Enz. Microbial Technol. 2010, V.46, №7, P.557-561
- Gul-Karaguler N., Sessions R.B., Clarke A.R., Holbrook J.J. // Biotechnol. Lett. 2001, V.23, №4, P.283-287
- Andreadeli A., Platis D., Tishkov V., Popov V., Labrou N.E. // FEBS J. 2008, V.275, №15, P.3859-3869
- Serov A.E., Popova A.S., Fedorchuk V.V., Tishkov V.I. // Biochem. J. 2002, V.367, №3, P.841-847
- Tishkov V.I., Galkin A.G., Egorov A.M. // Biochimie. 1989, V.71, №4, P.551-557
- Serov A.E., Popova A.S., Tishkov V.I. // Dokl. Biochem. Biophys. 2002, V.382, №1-3, P.26-30