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Activation of the ERK1/2 molecular pathways and its relation to the pathogenicity of human malignant tumors

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1. Title Title of document Activation of the ERK1/2 molecular pathways and its relation to the pathogenicity of human malignant tumors
2. Creator Author's name, affiliation, country A. G. Emelyanova; Moscow Institute of Physics and Technology; I.M. Sechenov First Moscow State Medical University; Россия
2. Creator Author's name, affiliation, country М. А. Zolotovskaia; Moscow Institute of Physics and Technology; I.M. Sechenov First Moscow State Medical University; Россия
2. Creator Author's name, affiliation, country Е. V. Poddubskaya; I.M. Sechenov First Moscow State Medical University; Россия
2. Creator Author's name, affiliation, country А. А. Modestov; Moscow Institute of Physics and Technology; I.M. Sechenov First Moscow State Medical University; Россия
2. Creator Author's name, affiliation, country V. S. Prassolov; Engelhardt Institute of Molecular Biology; Россия
2. Creator Author's name, affiliation, country D. V. Kuzmin; Moscow Institute of Physics and Technology ; Россия
2. Creator Author's name, affiliation, country A. A. Buzdin; Moscow Institute of Physics and Technology; I.M. Sechenov First Moscow State Medical University; Shemyakin–Ovchinnikov Institute of Bioorganic Chemistry; PathoBiology Group, European Organization for Research and Treatment of Cancer (EORTC); Россия
3. Subject Discipline(s)
3. Subject Keyword(s) ERK1 MAPK3; ERK2 MAPK1; gene expression in cancer; ERK molecular pathway activation in oncogenesis; cancer survival biomarkers
4. Description Abstract

Mitogen-activated protein kinases, ERK1/2 (MAPK3/1), play a key role in the regulation of cell growth, differentiation, and apoptosis. We have previously presented evidence proving that activation of the ERK1/2 axis in cancer cells following the administration of therapeutics leads to the overexpression of growth factor receptors and drug resistance. Recently, we have proposed a new bioinformatic technique that enables direct construction of interactome network-based molecular pathways for gene products of interest, as well as quantitation of their activation levels using high-throughput gene expression data. In this study, we, for the first time, algorithmically constructed ERK1/2 molecular pathways and investigated how their activation levels (PALs) affect survival and responsiveness to targeted drugs at the pan-cancer level based on transcriptomic data. We examined a total of 11 287 human tumor profiles from 31 types of cancer, drawn from 53 of our previously published and other literature datasets, looking at patient survival and clinical response to 29 chemo- and targeted therapy regimens. We found that activation of the ERK1/2 pathways has different prognostic significance depending on cancer type. In glioblastoma, sarcoma, lung, kidney, bladder, gastric, colon, and several other cancer types, ERK pathway activation was associated with worse survival. In contrast, the same phenomenon was associated with a better chance of survival in HER2+, luminal A and luminal B breast cancer, and uterine corpus cancer. These trends were consistent with treatment response analysis. At the same time, we found significantly worse associations with the expression levels of individual MAPK1 and MAPK3 genes: hence, ERK1/2 pathway activation levels can be considered putative biomarkers for predicting clinical outcomes and selecting new personalized treatment strategies, such as the use of MAPK inhibitors.

5. Publisher Organizing agency, location Acta Naturae Ltd
6. Contributor Sponsor(s) Ministry of Science and Higher Education of the Russian Federation (075-03-2024-117)
Russian Science Foundation (22-14-00074)
7. Date (DD-MM-YYYY) 22.04.2025
8. Type Status & genre Peer-reviewed Article
8. Type Type Research Article
9. Format File format
10. Identifier Uniform Resource Identifier https://actanaturae.ru/2075-8251/article/view/27497
10. Identifier Digital Object Identifier (DOI) 10.32607/actanaturae.27497
11. Source Title; vol., no. (year) Acta Naturae; Vol 17, No 1 (2025)
12. Language English=en en
13. Relation Supp. Files Appendices to the article (511KB) doi: 10.32607/20758251-2025-17-1-36-51-131991
Fig. 1. Schematic representation of the composition of algorithmically built molecular pathways centered around the ERK1 (A) and ERK2 (B) proteins. (487KB) doi: 10.32607/20758251-2025-17-1-36-51-132041
Fig. 2. The heatmap of hazard ratio values calculated for the activation (751KB) doi: 10.32607/20758251-2025-17-1-36-51-132042
Fig. 3. The heatmap of hazard ratio values calculated for the expression levels of the ERK1 and ERK2 individual genes for the (A) (742KB) doi: 10.32607/20758251-2025-17-1-36-51-132043
Fig. 4. The heatmap of averaged overall survival (OS) and progression-free survival (PFS) hazard ratio values calculated for (A) (602KB) doi: 10.32607/20758251-2025-17-1-36-51-132044
Fig. 5. Dendrogram based on clustering tumors by hazard ratio calculated for the ERK1- and ERK2-centric pathway activation data using TCGA gene expression profiles (509KB) doi: 10.32607/20758251-2025-17-1-36-51-132045
Fig. 6. Differences in PAL of the studied molecular pathways according to the response to therapy (A) (773KB) doi: 10.32607/20758251-2025-17-1-36-51-132046
Fig. 7. The heatmap of the hazard ratio values calculated for the activation of the molecular pathways ERK1 and ERK2 (145KB) doi: 10.32607/20758251-2025-17-1-36-51-132047
14. Coverage Geo-spatial location, chronological period, research sample (gender, age, etc.)
15. Rights Copyright and permissions Copyright (c) 2025 Emelyanova A.G., Zolotovskaia М.А., Poddubskaya Е.V., Modestov А.А., Prassolov V.S., Kuzmin D.V., Buzdin A.A.
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