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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Acta Naturae</journal-id><journal-title-group><journal-title xml:lang="en">Acta Naturae</journal-title><trans-title-group xml:lang="ru"><trans-title>Acta Naturae</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2075-8251</issn><publisher><publisher-name xml:lang="en">Acta Naturae Ltd</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">27747</article-id><article-id pub-id-type="doi">10.32607/actanaturae.27747</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>Research Articles</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>Экспериментальные статьи</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Comprehensive characterization of five <italic>Lactococcus</italic> strains: from phenotypic traits to genomic features</article-title><trans-title-group xml:lang="ru"><trans-title>Комплексная характеристика пяти штаммов <italic>Lactococcus</italic>: от фенотипических свойств к геномным особенностям</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0009-0002-1139-6162</contrib-id><name-alternatives><name xml:lang="en"><surname>Antipenko</surname><given-names>Ivan D.</given-names></name><name xml:lang="ru"><surname>Антипенко</surname><given-names>Иван Денисович</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Laboratory for Research on Molecular Mechanisms of Longevity, Department of Biology and Biotechnology</p></bio><bio xml:lang="ru"><p>факультет биологии и биотехнологии, лаборатория исследований молекулярных механизмов долголетия</p></bio><email>iantipenko@hse.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1108-3695</contrib-id><name-alternatives><name xml:lang="en"><surname>Sorokina</surname><given-names>Ninel P.</given-names></name><name xml:lang="ru"><surname>Сорокина</surname><given-names>Нинель Петровна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>n.sorokina@fncps.ru</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-8251-992X</contrib-id><name-alternatives><name xml:lang="en"><surname>Kucherenko</surname><given-names>Irina V.</given-names></name><name xml:lang="ru"><surname>Кучеренко</surname><given-names>Ирина Валентиновна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>i.kucherenko@fncps.ru</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0710-3083</contrib-id><name-alternatives><name xml:lang="en"><surname>Kuraeva</surname><given-names>Elena V.</given-names></name><name xml:lang="ru"><surname>Кураева</surname><given-names>Елена Вячеславовна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>e.kuraeva@fncps.ru</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1381-9344</contrib-id><name-alternatives><name xml:lang="en"><surname>Masezhnaya</surname><given-names>Elena S.</given-names></name><name xml:lang="ru"><surname>Масежная</surname><given-names>Елена Сергеевна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>e.masezhnaya@fncps.ru</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-6668-5028</contrib-id><name-alternatives><name xml:lang="en"><surname>Shkurnikov</surname><given-names>Maxim Y.</given-names></name><name xml:lang="ru"><surname>Шкурников</surname><given-names>Максим Юрьевич</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Laboratory for Research on Molecular Mechanisms of Longevity, Department of Biology and Biotechnology</p></bio><bio xml:lang="ru"><p>факультет биологии и биотехнологии, лаборатория исследований молекулярных механизмов долголетия</p></bio><email>mshkurnikov@hse.ru</email><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">HSE University</institution></aff><aff><institution xml:lang="ru">Национальный исследовательский университет «Высшая школа экономики»</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">All-Russian Research Institute of Butter and Cheese Making, Branch of the Gorbatov Federal Research Center for Food Systems</institution></aff><aff><institution xml:lang="ru">Всероссийский научно-исследовательский институт маслоделия и сыроделия – филиал Федерального научного центра пищевых систем им. В.М. Горбатова РАН</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2025-12-04" publication-format="electronic"><day>04</day><month>12</month><year>2025</year></pub-date><volume>17</volume><issue>4</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>83</fpage><lpage>92</lpage><history><date date-type="received" iso-8601-date="2025-07-16"><day>16</day><month>07</month><year>2025</year></date><date date-type="accepted" iso-8601-date="2025-08-21"><day>21</day><month>08</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2025, Antipenko I.D., Sorokina N.P., Kucherenko I.V., Kuraeva E.V., Masezhnaya E.S., Shkurnikov M.Y.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2025, Антипенко И.Д., Сорокина Н.П., Кучеренко И.В., Кураева Е.В., Масежная Е.С., Шкурников М.Ю.</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="en">Antipenko I.D., Sorokina N.P., Kucherenko I.V., Kuraeva E.V., Masezhnaya E.S., Shkurnikov M.Y.</copyright-holder><copyright-holder xml:lang="ru">Антипенко И.Д., Сорокина Н.П., Кучеренко И.В., Кураева Е.В., Масежная Е.С., Шкурников М.Ю.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://actanaturae.ru/2075-8251/article/view/27747">https://actanaturae.ru/2075-8251/article/view/27747</self-uri><abstract xml:lang="en"><p>The efficiency of dairy product fermentation directly depends on the properties of the lactic acid bacteria used, particularly on their metabolic activity and resistance to bacteriophages. Therefore, an understanding of the relationships between the genetic and phenotypic traits of industrial strains is of elevated importance. In this study, we comprehensively analyzed five <italic>Lactococcus</italic> strains widely used in the Russian dairy industry, combining whole-genome sequencing with phenotypic profiling. Despite the fact of genetic similarity among four of the <italic>L. lactis</italic> strains, we still identified significant differences in their metabolic activity. Comparative structural analysis of previously published genomes of 337 <italic>L. lactis</italic> and 147 <italic>L. cremoris</italic> strains revealed species-specific features of the lactose metabolism; in particular, the absence of the <italic>lacZ</italic> gene in <italic>L. cremoris</italic>. Notably, prophages were found in three of the studied strains, which was in correlation with their reduced acidification activity. <italic>L. lactis</italic> FNCPS 51n and 73n strains displayed resistance to all 50 tested bacteriophages, which may be associated with the presence of the AbiB abortive infection system. These findings underscore the importance of integrating genomic and phenotypic analyses when selecting efficient and phage-resistant <italic>Lactococcus</italic> starters in the dairy industry.</p></abstract><trans-abstract xml:lang="ru"><p>Эффективность ферментации молочных продуктов зависит от характеристик молочнокислых бактерий, прежде всего от их метаболической активности и устойчивости к бактериофагам, поэтому важно понимать связь между генетическими и фенотипическими особенностями штаммов, используемых в промышленности. Нами проведен комплексный анализ пяти широко применяемых в России штаммов <italic>Lactococcus</italic> с использованием полногеномного секвенирования и оценки фенотипических свойств. Несмотря на генетическое сходство четырех штаммов <italic>L. lactis</italic>, выявлены значительные различия в их метаболической активности. Сравнение структуры ранее опубликованных геномов 337 штаммов <italic>L. lactis</italic> и 147 штаммов <italic>L. cremoris</italic> выявило отсутствие гена <italic>lacZ</italic> у <italic>L. сremoris</italic>, что указывает на видоспецифичные особенности метаболизма лактозы. Важно отметить, что у трех из пяти исследованных штаммов было выявлено наличие профагов, что коррелировало с пониженной кислотообразующей активностью. Штаммы <italic>L. lactis </italic>FNCPS 51n и 73n были устойчивыми ко всем 50 протестированным бактериофагам, что может быть связано с наличием системы абортивной инфекции AbiB. Полученные данные подчеркивают значимость интеграции геномного и фенотипического анализа при отборе эффективных и устойчивых стартовых культур <italic>Lactococcus</italic> для молочной промышленности.</p></trans-abstract><kwd-group xml:lang="en"><kwd>Lactococcus</kwd><kwd>fermentation</kwd><kwd>genomic profiling</kwd><kwd>prophages</kwd><kwd>starter cultures</kwd><kwd>bacteriophages</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>Lactococcus</kwd><kwd>fermentation</kwd><kwd>genomic profiling</kwd><kwd>prophages</kwd><kwd>starter cultures</kwd><kwd>bacteriophages</kwd></kwd-group><funding-group><award-group><funding-source><institution-wrap><institution xml:lang="ru">Министерство науки и высшего образования РФ</institution></institution-wrap><institution-wrap><institution xml:lang="en">Ministry of Science and Higher Education of the Russian Federation</institution></institution-wrap></funding-source><award-id>075-15-2024-483</award-id></award-group></funding-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><citation-alternatives><mixed-citation xml:lang="en">Kondrotiene K, Zavistanaviciute P, Aksomaitiene J, Novoslavskij A, Malakauskas M. 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