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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Acta Naturae</journal-id><journal-title-group><journal-title xml:lang="en">Acta Naturae</journal-title><trans-title-group xml:lang="ru"><trans-title>Acta Naturae</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2075-8251</issn><publisher><publisher-name xml:lang="en">Acta Naturae Ltd</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">27327</article-id><article-id pub-id-type="doi">10.32607/actanaturae.27327</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>Research Articles</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>Экспериментальные статьи</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Dimeric Bis-Benzimidazole-Pyrroles DB2Py(n) – AT-Site-Specific Ligands: Synthesis, Physicochemical Analysis, and Biological Activity</article-title><trans-title-group xml:lang="ru"><trans-title>Димерные бисбензимидазолпирролы DB2Py(n) – АТ-сайт-специфичные лиганды: синтез, физико-химический анализ и исследования биологической активности</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Susova</surname><given-names>О. Y.</given-names></name><name xml:lang="ru"><surname>Сусова</surname><given-names>О. Ю.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Каrshieva</surname><given-names>S. S.</given-names></name><name xml:lang="ru"><surname>Каршиева</surname><given-names>С. Ш.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Кostyukov</surname><given-names>А. А.</given-names></name><name xml:lang="ru"><surname>Костюков</surname><given-names>А. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Мoiseevа</surname><given-names>N. I.</given-names></name><name xml:lang="ru"><surname>Моисеева</surname><given-names>Н. И.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Zaytseva</surname><given-names>Е. А.</given-names></name><name xml:lang="ru"><surname>Зайцева</surname><given-names>Е. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Каlabina</surname><given-names>К. V.</given-names></name><name xml:lang="ru"><surname>Калабина</surname><given-names>К. В.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Zusinaite</surname><given-names>Е.</given-names></name><name xml:lang="ru"><surname>Жусинайте</surname><given-names>Е.</given-names></name></name-alternatives><address><country country="EE">Estonia</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Gildemann</surname><given-names>К.</given-names></name><name xml:lang="ru"><surname>Гильдеманн</surname><given-names>К.</given-names></name></name-alternatives><address><country country="EE">Estonia</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Smirnov</surname><given-names>N. М.</given-names></name><name xml:lang="ru"><surname>Смирнов</surname><given-names>Н. М.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff4"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Аrutyunyan</surname><given-names>А. F.</given-names></name><name xml:lang="ru"><surname>Арутюнян</surname><given-names>А. Ф.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff4"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Zhuze</surname><given-names>А. L.</given-names></name><name xml:lang="ru"><surname>Жузе</surname><given-names>А. Л.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>o.susova@ronc.ru</email><xref ref-type="aff" rid="aff4"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">N.N. Blokhin National Medical Research Center of Oncology of the Ministry of Health</institution></aff><aff><institution xml:lang="ru">НМИЦ онкологии им. Н.Н. Блохина Минздрава России</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">Emanuel Institute of Biochemical Physics, Russian Academy of Sciences</institution></aff><aff><institution xml:lang="ru">Институт биохимической физики им. Н.М. Эмануэля РАН</institution></aff></aff-alternatives><aff-alternatives id="aff3"><aff><institution xml:lang="en">Tartu University Institute of Technology</institution></aff><aff><institution xml:lang="ru">Тартуский университет, Институт технологии</institution></aff></aff-alternatives><aff-alternatives id="aff4"><aff><institution xml:lang="en">Engelhardt Institute of Molecular Biology, Russian Academy of Sciences</institution></aff><aff><institution xml:lang="ru">Институт молекулярной биологии им. В.А. Энгельгардта РАН</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2024-05-10" publication-format="electronic"><day>10</day><month>05</month><year>2024</year></pub-date><volume>16</volume><issue>1</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>86</fpage><lpage>100</lpage><history><date date-type="received" iso-8601-date="2023-11-16"><day>16</day><month>11</month><year>2023</year></date><date date-type="accepted" iso-8601-date="2024-01-29"><day>29</day><month>01</month><year>2024</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Susova О.Y., Каrshieva S.S., Кostyukov А.А., Мoiseevа N.I., Zaytseva Е.А., Каlabina К.V., Zusinaite Е., Gildemann К., Smirnov N.М., Аrutyunyan А.F., Zhuze А.L.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2024, Сусова О.Ю., Каршиева С.Ш., Костюков А.А., Моисеева Н.И., Зайцева Е.А., Калабина К.В., Жусинайте Е., Гильдеманн К., Смирнов Н.М., Арутюнян А.Ф., Жузе А.Л.</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Susova О.Y., Каrshieva S.S., Кostyukov А.А., Мoiseevа N.I., Zaytseva Е.А., Каlabina К.V., Zusinaite Е., Gildemann К., Smirnov N.М., Аrutyunyan А.F., Zhuze А.L.</copyright-holder><copyright-holder xml:lang="ru">Сусова О.Ю., Каршиева С.Ш., Костюков А.А., Моисеева Н.И., Зайцева Е.А., Калабина К.В., Жусинайте Е., Гильдеманн К., Смирнов Н.М., Арутюнян А.Ф., Жузе А.Л.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://actanaturae.ru/2075-8251/article/view/27327">https://actanaturae.ru/2075-8251/article/view/27327</self-uri><abstract xml:lang="en"><p>Its broad spectrum of biological activity makes benzimidazole a fundamental pharmacophore in pharmaceutics. The paper describes newly synthesized AT-specific fluorescent bis-benzimidazole molecules DB<sub>2</sub>Py(n) that contain a pyrrolcarboxamide fragment of the antibiotic drug netropsin. Physico-chemical methods using absorption, fluorescence, and circular dichroism spectra have shown the ability of bis-benzimidazole-pyrroles to form complexes with DNA. The new DB2Py(n) series have turned out to be more toxic to human tumor lines and less vulnerable to non-tumor cell lines. Bis-benzimidazole-pyrroles penetrated the cell nucleus, affected the cell-cycle synthesis (S) phase, and inhibited eukaryotic topoisomerase I in a cell-free model at low concentrations. A real-time tumor cell proliferation test confirmed the molecule’s enhanced toxic properties upon dimerization. Preliminary cytotoxicity data for the bis-benzimidazole-pyrroles tested in a cell model with a MDR phenotype showed that monomeric compounds can overcome MDR, while dimerization weakens this ability to its intermediate values as compared to doxorubicin. In this respect, the newly synthesized cytotoxic structures seem promising for further, in-depth study of their properties and action mechanism in relation to human tumor cells, as well as for designing new AT-specific ligands.</p></abstract><trans-abstract xml:lang="ru"><p>Бензимидазол является фундаментальным фармакофором при создании лекарств из-за его широкого спектра биологической активности. Синтезированы новые АТ-специфичные флуоресцентные молекулы бисбензимидазола DB<sub>2</sub>Py(n), содержащие пирролкарбоксамидный фрагмент антибиотика нетропсина. С использованием спектров поглощения, флуоресценции и кругового дихроизма показана способность бисбензимидазолпирролов к комплексообразованию с ДНК. Новая серия DB2Py(n) оказалась более токсичной на линиях опухолевых клеток человека и менее токсичной для неопухолевых клеток. Бисбензимидазолпирролы проникали в ядро клетки, воздействовали на фазу S-клеточного цикла, а также в низких концентрациях ингибировали эукариотическую топоизомеразу I в бесклеточной модели. Анализ пролиферации опухолевых клеток в режиме реального времени подтвердил усиление токсических свойств при димеризации бисбензимидазолпиррола. Согласно предварительным данным определения цитотоксичности бисбензимидазолпирролов на клеточной модели с фенотипом множественной лекарственной устойчивости мономерные соединения преодолевают множественную лекарственную устойчивость, в то время как димеризация молекулы приводит к снижению этого свойства до средних величин по сравнению с доксорубицином. Таким образом, новые цитотоксичные бисбензимидазолпиррольные структуры представляют интерес для дальнейшего глубокого изучения их свойств и механизма действия в отношении опухолевых клеток человека, а также для дизайна новых АТ-специфичных лигандов.</p></trans-abstract><kwd-group xml:lang="en"><kwd>bis-benzimidazole-pyrrole</kwd><kwd>DNA narrow groove binding ligand</kwd><kwd>cytotoxicity</kwd><kwd>DNA-binding</kwd><kwd>topoisomerase I</kwd><kwd>cell cycle</kwd><kwd>multidrug resistance</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>бисбензимидазолпиррол</kwd><kwd>узкобороздочный лиганд</kwd><kwd>цитотоксичность</kwd><kwd>комплексообразование с ДНК</kwd><kwd>топоизомераза I</kwd><kwd>клеточный цикл</kwd><kwd>множественная лекарственная устойчивость</kwd></kwd-group><funding-group><award-group><funding-source><institution-wrap><institution xml:lang="ru">РНФ</institution></institution-wrap><institution-wrap><institution xml:lang="en">Russian Science Foundation</institution></institution-wrap></funding-source><award-id>23-25-00373</award-id></award-group></funding-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Venugopal S., Kaur B., Verma A., Wadhwa P., Magan M., Hudda S., Kakoty V. // Chem. Biol. Drug Design. 2023. V. 102. P. 357–376.</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Wu K., Peng X., Chen M., Li Y., Tang G., Peng J., Peng Y., Cao X. // Chem. Biol. Drug Design. 2022. V. 99. № 5. P. 736–757.</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Tyagi Y.K., Jali G., Singh R. // Anticancer Agents Med. Chem. 2022. V. 22. № 19. P. 3280–3290.</mixed-citation></ref><ref id="B4"><label>4.</label><mixed-citation>Brishty S.R., Hossain M.J., Khandaker M.U., Faruque M.R.I., Osman H., Rahman S.M.A. // Front. Pharmacol. 2021. V. 12. P. 762807.</mixed-citation></ref><ref id="B5"><label>5.</label><mixed-citation>Ivanov A.A., Salyanov V.I., Strel’tsov S.A., Cherepanova N.A., Gromova E.S., Zhuze A.L. // Rus. J. Bioorg. Chem. 2011. V. 37. № 4. P. 530–541.</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Koval V.S., Ivanov A.A., Salyanov V.I., Stomakhin A.A., Oleinikov V.A., Zhuze A.L. // Rus. J. Bioorg. Chem. 2017. V. 43. № 2. P. 167–173.</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Koval V.S., Arutyunyan A.F., Salyanov V.L., Klimova R.R., Kushch A.A., Rybalkina E.Yu., Susova O.Yu., Zhuze A.L. // Bioorg. Med. Chem. 2018. V. 26. № 9. P. 2302–2309.</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Koval V.S., Arutyunyan A.F., Salyanov V.I., Kostyukov A.A., Melkina O.E., Zavilgelsky G.B., Klimova R.R., Kushch A.A., Korolev S.P., Agapkina Y.Yu., et al // Bioorg. Med. Chem. 2020. V. 28. P. 115378.</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>Teng M.K., Usman N., Frederick C.A., Wang A.H. // Nucl. Acids Res. 1988. V. 16. P. 2671–2690.</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>Finlay A.C., Hochstein F.A., Sobin B.A., Murphy F.X. // J. Am. Chem. Soc. 1951. V. 73. № 1. P. 341–343.</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Lisitsina E.S., Durandin N.A., Ivanov A.A., Strel’tsov S.A., Susova O.Yu., Shtil A.A., Zhuze A.L., Kuz’min V.A. // Mol. Biol. (Moskow). 2012. V. 46. P. 922–927.</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Yevdokimov Yu.M., Skuridin S.G., Lortkipanidze G.B. // Liquid Crystals. 1992. V. 12. № 1. P. 1–16.</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Gromyko A.V., Salyanov V.I., Strel’tsov S.A., Oleinikov V.A., Korolev S.P., Gottikh M.B., Zhuze A.L. // Rus. J. Bioorg. Chem. 2007. V. 33. № 6. P. 613–623.</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Susova O., Poletaeva A., Lupatov A., Kholodenko I., Karamysheva A., Mitrofanov A.A., Naskhletashvili D., Nasedkina T., Bekyashev A. // Ann. Oncol. 2021. № 32. P. 519.</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Ammour Y., Susova O., Krasnov G., Nikolaeva E., Varachev V., Schetinina Y., Gavrilova M., Mitrofanov A., Poletaeva A., Bekyashev A., et al // Viruses. 2022. V. 14. № 11. Р. 2433.</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>Gaffney E.V. // Cell Tissue Res. 1982. V. 227. P. 563–568.</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Saint-Ruf C., Nardeux P., Estrade S., Brouty-Boye D., Lavialle C., Rhim J.S., Cassingena R. // Exp. Cell Res. 1988. V. 176. P. 60–67.</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>Rybalkina E.Y., Moiseeva N.I., Karamysheva A.F., Eroshenko D.V., Konysheva A.V., Nazarov A.V., Grishko V.V. // Chem. Biol. Interact. 2021. V. 1. № 348. Р. 109645.</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Chen H., Shan J., Chen D., Wang R., Qi W., Wang H., Ke Y., Liu W., Zeng X. // J. Cell. Physiol. 2018. V. 234. P. 11871–11881.</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Khader E.I., Ismail W.W., Mhaidat N.M., Alqudah M.A. // Int. J. Hlth Sci. (Quassim). 2021. V. 15. P. 34–41.</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Pommier Y. // Nat. Rev. Cancer. 2006. V. 6. № 10. P. 789–802.</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Li T.-K. // Annu. Rev. Pharmacol. Toxicol. 2001. V. 41. Р. 53–77.</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>Pommier Y. // ACS Chem. Biol. 2013. V. 8. № 1. P. 82–95.</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Verma S., Ravichandiran V., Ranjan N., Flora S.J.S. // Med. Chem. 2020. V. 16. № 4. P. 454–486.</mixed-citation></ref><ref id="B25"><label>25.</label><mixed-citation>Akhtar W., Khan M.F., Verma G., Shaquiquzzaman M., Rizvi M.A., Mehdi S.H., Akhter M., Alam M.M. // Eur. J. Med. Chem. 2017. V. 27. № 126. Р. 705–753.</mixed-citation></ref><ref id="B26"><label>26.</label><mixed-citation>Shrivastava N., Naim M.J., Alam M.J., Nawaz F., Ahmed S., Alam O. // Arch. Pharm. Chem. Life Sci. 2017. V. 350. P.e 1700040.</mixed-citation></ref><ref id="B27"><label>27.</label><mixed-citation>Gao C., Li B., Zhang B., Sun Q., Li L., Li X., Chen C., Tan C., Liu H., Jiang Y. // Bioorg. Med. Chem. 2015. V. 23. № 8. P. 1800–1807.</mixed-citation></ref><ref id="B28"><label>28.</label><mixed-citation>Evdokimov Yu.M., Skuridin S.G., Lortkipanidze G.B. // Liquid Crystals. 1992. V. 12. № 1. P. 1–16.</mixed-citation></ref><ref id="B29"><label>29.</label><mixed-citation>Pjura P.E., Grzeskowiak K., Dickerson R.E. // J. Mol. Biol. 1987. V. 20. № 197. P. 257–271.</mixed-citation></ref><ref id="B30"><label>30.</label><mixed-citation>Ianevski A., Kulesskiy E., Krpina K., Lou G., Aman Y., Bugai A., Aasumets K., Akimov Y., Bulanova D., Gildemann K., et al. // Cancers (Basel). 2020. V. 12. P. 1694.</mixed-citation></ref><ref id="B31"><label>31.</label><mixed-citation>Belikov S.V., Grokhovsky S.L., Isaguliants M.G., Surovaya A.N., Gursky G.V. // J. Biomol. Struct. Dyn. 2005. V. 23. № 2. P. 193–202.</mixed-citation></ref><ref id="B32"><label>32.</label><mixed-citation>Dickinson L.A., Gulizia R.J., Trauger J.W., Baird E.E., Mosier D.E., Gottesfeld J.M., Dervan P.B. // Proc. Natl. Acad. Sci. USA. 1998. V. 95. № 22. P. 12890–12895.</mixed-citation></ref></ref-list></back></article>
