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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Acta Naturae</journal-id><journal-title-group><journal-title xml:lang="en">Acta Naturae</journal-title><trans-title-group xml:lang="ru"><trans-title>Acta Naturae</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2075-8251</issn><publisher><publisher-name xml:lang="en">Acta Naturae Ltd</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">10858</article-id><article-id pub-id-type="doi">10.32607/20758251-2019-11-3-89-98</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>Research Articles</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>Экспериментальные статьи</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">An Abnormally High Closing Potential of the OMPF Porin Channel from Yersinia Ruckeri: The Role of Charged Residues and Intramolecular Bonds</article-title><trans-title-group xml:lang="ru"><trans-title>Аномально высокий потенциал закрытия канала порина OmpF из Yersinia ruckeri: роль заряженных остатков и внутримолекулярных связей</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Chistyulin</surname><given-names>D. K.</given-names></name><name xml:lang="ru"><surname>Чистюлин</surname><given-names>Д. К.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>cdk27@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Novikova</surname><given-names>O. D.</given-names></name><name xml:lang="ru"><surname>Новикова</surname><given-names>О. Д.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>cdk27@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Zelepuga</surname><given-names>E. A.</given-names></name><name xml:lang="ru"><surname>Зелепуга</surname><given-names>Е. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>zel@piboc.dvo.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Khomenko</surname><given-names>V. A.</given-names></name><name xml:lang="ru"><surname>Хоменко</surname><given-names>В. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>cdk27@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Likhatskaya</surname><given-names>G. N.</given-names></name><name xml:lang="ru"><surname>Лихацкая</surname><given-names>Г. Н.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>cdk27@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Portnyagina</surname><given-names>O. Yu.</given-names></name><name xml:lang="ru"><surname>Портнягина</surname><given-names>О. Ю.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>cdk27@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Antonenko</surname><given-names>Y. N.</given-names></name><name xml:lang="ru"><surname>Антоненко</surname><given-names>Ю. Н.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><email>cdk27@mail.ru</email><xref ref-type="aff" rid="aff2"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch, Russian Academy of Sciences</institution></aff><aff><institution xml:lang="ru">Тихоокеанский институт биоорганической химии им. Г.Б. Елякова ДВО РАН</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University</institution></aff><aff><institution xml:lang="ru">Институт физико-химической биологии им. А.Н. Белозерского Московского государственного университета им. М.В. Ломоносова</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2019-09-15" publication-format="electronic"><day>15</day><month>09</month><year>2019</year></pub-date><volume>11</volume><issue>3</issue><issue-title xml:lang="en">VOL 11, NO3 (2019)</issue-title><issue-title xml:lang="ru">ТОМ 11, №3 (2019)</issue-title><fpage>89</fpage><lpage>98</lpage><history><date date-type="received" iso-8601-date="2020-01-21"><day>21</day><month>01</month><year>2020</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2019, Chistyulin D.K., Novikova O.D., Zelepuga E.A., Khomenko V.A., Likhatskaya G.N., Portnyagina O.Y., Antonenko Y.N.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2019, Чистюлин Д.К., Новикова О.Д., Зелепуга Е.А., Хоменко В.А., Лихацкая Г.Н., Портнягина О.Ю., Антоненко Ю.Н.</copyright-statement><copyright-year>2019</copyright-year><copyright-holder xml:lang="en">Chistyulin D.K., Novikova O.D., Zelepuga E.A., Khomenko V.A., Likhatskaya G.N., Portnyagina O.Y., Antonenko Y.N.</copyright-holder><copyright-holder xml:lang="ru">Чистюлин Д.К., Новикова О.Д., Зелепуга Е.А., Хоменко В.А., Лихацкая Г.Н., Портнягина О.Ю., Антоненко Ю.Н.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://actanaturae.ru/2075-8251/article/view/10858">https://actanaturae.ru/2075-8251/article/view/10858</self-uri><abstract xml:lang="en"><p>Electrophysiological experiments on bilayer lipid membranes showed that the isolated outer membrane major porin of Yersinia ruckeri (YrOmpF) exhibits activity typical of porins from Gram-negative bacteria, forming channels with a mean conductance of 230 pS (in 0.1 M KCl) and slight asymmetry with respect to the applied voltage. Under acidic conditions (up to pH = 3.0), there was no significant decrease in the total conductance of the YrOmpF channel reconstituted into the bilayer. The studied channel significantly differed from the porins of other bacteria by high values of its critical closing potential (Vc): Vc = 232 mV at pH = 7.0 and Vc = 164 mV at pH = 5.0. A theoretical model of the YrOmpF spatial structure was used for the analysis of the charge distribution in the mouth and inside the channel to explain these properties and quantitatively assess the bonds between the amino acid residues in the L3 loop and on the inner wall of the barrel. The parameters of YrOmpF were compared with those of the classical OmpF porin from E. coli. The results of electrophysiological experiments and theoretical analysis are discussed in terms of the mechanism for voltage-dependent closing of porin channels.</p></abstract><trans-abstract xml:lang="ru"><p>Электрофизиологические эксперименты на бислойных липидных мембранах показали, что изолированный основной порин наружной мембраны бактерии <italic>Yersinia ruckeri</italic> (YrOmpF) обладает типичной для поринов грамотрицательных бактерий активностью, образуя каналы со средней проводимостью 230 пСм (в 0.1 M KCl) и небольшой асимметрией по отношению к приложенному потенциалу. Не выявлено существенного уменьшения суммарной проводимости встроенного в бислой канала YrOmpF при закислении среды (вплоть до pH 3.0). От поринов других бактерий исследуемый канал существенно отличают высокие значения критического потенциала закрытия (<italic>V</italic>c): при pH 7.0 <italic>V</italic>c = 232 мВ, при pH 5.0 <italic>V</italic>c = 164 мВ. Для объяснения этих свойств с помощью теоретической модели пространственной структуры YrOmpF проанализировано распределение зарядов в устье и внутри канала, а также дана количественная оценка связей между аминокислотными остатками, локализованными в петле L3 и на внутренней стенке барреля. Проведено сравнение характеристик YrOmpF и классического порина OmpF <italic>Escherichia сoli</italic>. Результаты электрофизиологических экспериментов и теоретического анализа обсуждаются с точки зрения механизма потенциал-зависимого закрытия пориновых каналов.</p></trans-abstract><kwd-group xml:lang="en"><kwd>Yersinia ruckeri</kwd><kwd>pore-forming proteins</kwd><kwd>bilayer lipid membranes</kwd><kwd>voltage-dependent gating</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>Yersinia ruckeri</kwd><kwd>бислойные липидные мембраны</kwd><kwd>критический потенциал закрытия</kwd><kwd>порообразующие белки</kwd></kwd-group><funding-group><funding-statement xml:lang="en">This work was financially supported in part by the Russian Foundation for Basic Research (No. 19-03-00318).</funding-statement><funding-statement xml:lang="ru">Работа выполнена при частичной финансовой поддержке гранта Российского фонда фундаментальных исследований (проект № 19-03-00318).</funding-statement></funding-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>1. 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