Acta NaturaeActa NaturaeActa Naturae2075-8251Acta Naturae Ltd1083410.32607/20758251-2009-1-1-124-127ArticlesСтатьиResearch ArticleThe Role of Stacking Interactions in Complexes of Proteins with Adenine and Guanine Fragments of LigandsThe Role of Stacking Interactions in Complexes of Proteins with Adenine and Guanine Fragments of LigandsPyrkovT Vpyrkov@nmr.ruPyrkovaD VBalitskayaE DEfremovR GShemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of SciencesMoscow Institute of Physics and Technology (State University)Moscow State UniversityShemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences1506200911NO1 (2009)№1 (2009)12412717012020Copyright ©; 2009, Pyrkov T.V., Pyrkova D.V., Balitskaya E.D., Efremov R.G.Copyright ©; 2009, Pyrkov T.V., Pyrkova D.V., Balitskaya E.D., Efremov R.G.2009Pyrkov T.V., Pyrkova D.V., Balitskaya E.D., Efremov R.G.Pyrkov T.V., Pyrkova D.V., Balitskaya E.D., Efremov R.G.https://creativecommons.org/licenses/by/4.0https://actanaturae.ru/2075-8251/article/view/10834[Hanson M.A., Stevens R.C. Structure. (2009) 17, 8-14.][Kitchen D.B., Decornez H., Furr J.R., Bajorath J. Nat. Rev. Drug. Discov. (2004) 3, 935949.][Moitessier N., Englebienne P., Lee D., Lawandi J., Corbeil C.R. Br. J. Pharmacol. (2008)153, S7-S26.][Eldridge M.D., Murray C.W., Auton T.R., Paolini G.V., Mee R.P. J. Comput. Aided. Mol. Des. (1997) 11, 425-445.][Pyrkov T.V., Kosinsky Y.A., Arseniev A.S., Priestle J.P., Jacoby E., Efremov R.G. PROTE INS (2007) 66, 388-398.][Deng Z., Chuaqui C., Singh J. J. Med. Chem. (2004) 47, 337-344.][Chakrabarti P., Bhattacharyya R. Prog. Biophys. Mol. Biol. (2007) 95, 83-137.][Gotoh O. Adv. Biophys. (1983) 16, 1-52.][Sponer J., Leszczynski J., Hobza P. J. Biomol. Struct. Dynam. (1996) 14, 117-135.][Chelli R., Gervasio F.L., Procacci P., Schettino V. J. Am. Chem. Soc. (2002) 124, 61336143.][Tsuzuki S., Honda K., Uchimaru T., Mikami M., Tanabe K. J. Am. Chem. Soc. (2001)124, 104-112.][Small D., Zaitsev V., Jung Y., Rosokha S.V., Head-Gordon M., Kochi J.K. J. Am. Chem. Soc. (2004) 126, 13850-13858.][Sato T., Tsuneda T., Hirao K. J. Chem. Phys. (2005) 123, 104307.][Malathy Sony S.M., Ponnuswamy M.N. Crystal Growth - Design (2006) 6, 736-742.][Waters M.L. Curr. Opin. Chem. Biol. (2002) 6, 736-741.][Meyer E.A., Castellano R.K., Diederich F. Angew. Chem. Int. Ed. (2003) 42, 1210-1250.][Tewari A.K., Dubey R. Bioorg. Med. Chem. (2008) 16, 126-143.][Jones G., Willett P., Glen R.C., Leach A.R., Taylor R.D. J. Mol. Biol. (1997) 267, 727-748.][Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. Nucleic. Acid. Res. (2000) 28, 235-242.][Chalk A.J., Worth C.L., Overington J.P., Chan A.W. J Med Chem. (2004) 47, 3807-3816.][Larkin M.A., Blackshields G., Brown N.P., Chenna R., Mc-ettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Bioinformatics. (2007) 23, 2947-2948.][Pyrkov T.V., Chugunov A.O., Krylov N.A., Nolde D.E., Efremov R.G. Bioinformatics. (2009) DOI: 10.1093/bioinformatics/btp111]